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Organisations source: ARRS

Center of excellence for integrated approaches in chemistry and biology of proteins, Ljubljana

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Research activity

Code Science Field Subfield
1.04.00  Natural sciences and mathematics  Chemistry   
2.02.00  Engineering sciences and technologies  Chemical engineering   
3.01.00  Medical sciences  Microbiology and immunology   
4.06.00  Biotechnical sciences  Biotechnology   
7.02.00  Interdisciplinary research  Interdisciplinary research   

Code Science Field
P000  Natural sciences and mathematics   
B000  Biomedical sciences   
T000  Technological sciences   

Code Description
1  Consultancy 
2  Research 
3  Education 
5  Non commercial 
6  Technology transfer 
7  Other 
Evaluation (rules)
source: COBISS
Points
733.97
A''
228.64
A'
518.73
A1/2
626.38
CI10
5,333
CImax
799
h10
37
A1
2.88
A3
1.36
Data for the last 5 years (citations for the last 10 years) on June 1, 2023; A3 for period 2017-2021
Citations Citations for bibliographic records in COBIB.SI that are linked to records in citation databases
source: WoS source: Scopus source: COBISS
Database Linked records Citations Pure citations Average pure citations
WoS 154  11,209  9,804  63.66 
Scopus 136  11,276  9,890  72.72 
Research groups (1)
no. Code Name of group Responsible person No. of publications
1. 2990-001  RS Center odličnosti za integrirane pristope v kemiji in biologiji proteinov (Slovene)  PhD Dušan Turk   683 
Researchers (4)
no. Code Name and surname Research area Status No. of publications
1. 32503  PhD Katarina Karničar  Biotechnical sciences  Researcher  14 
2. 04988  PhD Dušan Turk  Natural sciences and mathematics  Researcher  581 
3. 08773  PhD Livija Tušar  Natural sciences and mathematics  Researcher  109 
4. 26515  PhD Aleksandra Usenik  Natural sciences and mathematics  Researcher  43 
Research projects (15) Legend
no. Code Title Period Responsible person No. of publications
1. J1-2473  Human cathepsin F: An unusual cysteine protease involved in neurodegeneration  9/1/2020 - 8/31/2023  PhD Veronika Stoka   1,688 
2. J1-1709  Strukturni vpogled v mehanizem tvorbe površine bakterije Clostridium difficile  7/1/2019 - 6/30/2023  PhD Dušan Turk   2,023 
3. J7-9435  Role of legumain in infection and inflammation  7/1/2018 - 5/31/2022  PhD Marko Fonović   1,255 
4. J1-8152  Inhibition of Staphylococcus aureus cell wall remodeling  5/1/2017 - 4/30/2020  PhD Dušan Turk   1,847 
5. L7-8277  The development of enzyme formulation for disinfecting prion-contaminated areas.  5/1/2017 - 4/30/2019  PhD Nataša Poklar Ulrih   3,091 
6. J1-7479  Structural insight into iodine metabolism  1/1/2016 - 12/31/2018  PhD Dušan Turk   1,646 
7. J1-6739  Role of cysteine cathepsins in inflammation-associated diseases  7/1/2014 - 6/30/2017  PhD Boris Turk   2,223 
8. J3-5499  Exosome-associated Nef released from HIV infected cells contributes importantly to the development of neuroAIDS  8/1/2013 - 7/31/2016  PhD Boris Matija Peterlin   3,996 
9. L4-5533  Prevention of growth of pathogenic fungi in dishwashers  8/1/2013 - 7/31/2016  PhD Nina Gunde-Cimerman   1,796 
10. J3-5500  Proteomic and aptamer-based approaches for study of host-pathogen interactions in staphylococcal and clostridial infections  8/1/2013 - 7/31/2016  PhD Maja Rupnik   5,546 
11. J1-5449  Role of cysteine proteases in the process of cancerogenesis  8/1/2013 - 7/31/2016  PhD Marko Fonović   2,574 
12. J3-4267  Involvement of the Lysosomal Cysteine Peptidase Inhibitors in Progression and Metastasis of Mammary Cancer  7/1/2011 - 6/30/2014  PhD Olga Vasiljeva   1,689 
13. J7-4050  Oligomers of amyloidogenic proteins from a to z: biophysical properties, structure, function and mutual interactions  7/1/2011 - 6/30/2014  PhD Eva Žerovnik   3,650 
14. J1-4213  Role and relevance of empirical geometric parameters in crystal structure determination of macromolecules for prediction of ligand binding  7/1/2011 - 6/30/2014  PhD Dušan Turk   1,540 
15. J1-4121  The role of cysteine cathepsins in cellular signalling  7/1/2011 - 6/30/2014  PhD Boris Turk   2,603 
ARRS research and infrastructure programmes (3) Legend
no. Code Title Period Responsible person No. of publications
1. I0-0048  The Infrastructure Program for Analysis and Production of Proteins and Biologically Active Molecules of Medical Importance   1/1/2022 - 12/31/2027  PhD Dušan Turk   683 
2. I0-0048    1/1/2015 - 12/31/2021  PhD Dušan Turk   2,648 
3. I0-0048  Analiza in proizvodnja proteinov in biološko aktivnih molekul medicinskega pomena (Slovene)  1/1/2013 - 12/31/2014  PhD Dušan Turk   1,253 
Research equipment (46)
no. Equipment name Year of purchase Purchase price (€) Responsible for equipment Classification Source of co-financing
1. Analytical HPLC  2011  40992  PhD Enej Kuščer   Cell culture facilities  Eropean founds (ESSR) and MIZŠ funds 
2. Aparat ROTOR-GENE Q, 5-PLEX HRMReal-time PCR device with HRM (High Resolution Melt) option  2010  44714  PhD Maja Rupnik   Genomic, transcriptomic, proteomics and metabolomics facilities  Eropean founds (ESSR) and MIZŠ funds 
3. BD FACSCanto II 2LSR 5/3 COMPLETE Flow Cytometry  2011  174000  PhD Maja Rupnik   Analytical facilities  Eropean founds (ESSR) and MIZŠ funds 
4. Bruker Mass spectrometer ULTRAFLEXTREME tm maldi tof  2010  792044  PhD Boris Turk   Genomic, transcriptomic, proteomics and metabolomics facilities  Eropean founds (ESSR) and MIZŠ funds 
5. Centrifugal evaporator  2010  41275  PhD Enej Kuščer   Cell culture facilities  Eropean founds (ESSR) and MIZŠ funds 
6. Circular Dichroism (CD) Spectropolarimeter with stopped-flow attachments   2013  90144  PhD Boris Turk   Analytical facilities  Eropean founds (ESSR) and MIZŠ funds 
7. Components for fluorescence signal manipulation  2011  179156  PhD Robert Zorec   Structural biology facilities  Eropean founds (ESSR) and MIZŠ funds 
8. Cooling centrifuge for volumes to 500 ml  2011  23501  PhD Maja Rupnik   Analytical facilities  Eropean founds (ESSR) and MIZŠ funds 
9. Crystalization platform - Systems for crystal imaging  2013  532521  PhD Dušan Turk   Structural biology facilities  Eropean founds (ESSR) and MIZŠ funds 
10. Easy max Mettler and React IR45FTIR InSitu  2011  172320  PhD Stojan Stavber   Materials synthesis or testing facilities  Eropean founds (ESSR) and MIZŠ funds 
11. Flow cytometry  2011  74940  PhD Igor Križaj   Analytical facilities  Eropean founds (ESSR) and MIZŠ funds 
12. High performance cluster computer  2011  71850  PhD Sašo Džeroski   Systems biology/computational biology facilities  Eropean founds (ESSR) and MIZŠ funds 
13. High performance cluster computer II  2012  61703  PhD Sašo Džeroski   Systems biology/computational biology facilities  Eropean founds (ESSR) and MIZŠ funds 
14. High performance cluster computer III  2013  96044  PhD Sašo Džeroski   Systems biology/computational biology facilities  Eropean founds (ESSR) and MIZŠ funds 
15. High performance HPLC (Agilent Technologies Agilent 1260)/  2011  86194  PhD Nataša Poklar Ulrih   Analytical facilities  Eropean founds (ESSR) and MIZŠ funds 
16. High-pressure HPLC system with computer Dell Optex 755 USFF, TP Link TL-SG1008D 10/100/1000 8-port, D-link USB   2011  37665  PhD Stojan Stavber   Analytical facilities  Eropean founds (ESSR) and MIZŠ funds 
17. INFORS Multitron II (two-deck)  2010  49099  PhD Enej Kuščer   Cell culture facilities  Eropean founds (ESSR) and MIZŠ funds 
18. Inverted fluorescence microscope Olympus IX81 with the incubation chamber (from Solent Scientific) attached to the platform of the Olympus microscope   2010  28391  PhD Boris Turk   Structural biology facilities  Eropean founds (ESSR) and MIZŠ funds 
19. ITC (Isothermal titration calorimetry)  2012  77992  PhD Dušan Turk   Structural biology facilities  Eropean founds (ESSR) and MIZŠ funds 
20. Laboratory chemical reactors from 100 to 500 ml  2011  43865  Branko Jenko   Materials synthesis or testing facilities  Eropean founds (ESSR) and MIZŠ funds 
21. LC-MS system for identification and quantification of small molecules (Thermo Scientific TSQ Quatum Access MAX/Accela 1250 )  2011  248943  Branko Jenko   Analytical facilities  Eropean founds (ESSR) and MIZŠ funds 
22. Leica Acoustooptical beamsplitter (AOBS) with spectral detectors  2011  244920  PhD Marjan Slak Rupnik   Structural biology facilities  Eropean founds (ESSR) and MIZŠ funds 
23. Leica System for non-linear nanoscopy in tandem configuration   2011  244920  PhD Marjan Slak Rupnik   Structural biology facilities  Eropean founds (ESSR) and MIZŠ funds 
24. Microscope with laser diode 405 nm CW  2011  175337  PhD Robert Zorec   Structural biology facilities  Eropean founds (ESSR) and MIZŠ funds 
25. Modular double channel fluorimeter with Xe light source and detection range up to 900 nm  2013  76283  PhD Boris Turk   Analytical facilities  Eropean founds (ESSR) and MIZŠ funds 
26. Motorized upright research microscope Axio Imager M2  2013  51088  PhD Ana Plemenitaš   Cell culture facilities  Eropean founds (ESSR) and MIZŠ funds 
27. Multi-functional spectrophotometer for microtiter plates  2010  32369  PhD Ana Plemenitaš   Analytical facilities  Eropean founds (ESSR) and MIZŠ funds 
28. Preparative HPLC system  2010  46199  PhD Enej Kuščer   Cell culture facilities  Eropean founds (ESSR) and MIZŠ funds 
29. Preparative HPLC system,  2010  53853  PhD Dušan Turk   Structural biology facilities  Eropean founds (ESSR) and MIZŠ funds 
30. Pulsed field electrophoresis system instrument (BIO-RAD CHEF-DIII CHILLER SYS)  2013  23958  PhD Nina Gunde-Cimerman   Analytical facilities  Eropean founds (ESSR) and MIZŠ funds 
31. Robot for chrystallization   2013  77689  PhD Dušan Turk   Structural biology facilities  Eropean founds (ESSR) and MIZŠ funds 
32. Sartorius Stedim Systems GmbH Fermenter BIOSTAT Cplus 20L  2011  118800  PhD Enej Kuščer   Cell culture facilities  Eropean founds (ESSR) and MIZŠ funds 
33. Sartorius Stedim Systems GmbH Fermenter BIOSTAT D-DCU II 100L  2011  246000  PhD Enej Kuščer   Cell culture facilities  Eropean founds (ESSR) and MIZŠ funds 
34. Sartorius Stedim Systems GmbH Fermenter BIOSTAT Dplus 150L for microbial fermentation and cell culture  2011  200400  PhD Enej Kuščer   Cell culture facilities  Eropean founds (ESSR) and MIZŠ funds 
35. Set rotary shakers  2012  49726  PhD Nina Gunde-Cimerman   Biobanks including seed banks  Eropean founds (ESSR) and MIZŠ funds 
36. Static Light Scattering detector with Refractive Index Detector (RI)  2013  79589  PhD Dušan Turk   Structural biology facilities  Eropean founds (ESSR) and MIZŠ funds 
37. Superresolution Combined Light Microscopy  2011  584939  PhD Robert Zorec   Structural biology facilities  Eropean founds (ESSR) and MIZŠ funds 
38. System for isolation of recombinant proteins: ÄKTAexpress Single System  2010  50389  PhD Dušan Turk   Structural biology facilities  Eropean founds (ESSR) and MIZŠ funds 
39. System for macromolekular crystal structure determination (Bruker X8 PROTEUM)   2011  621415  PhD Dušan Turk   Structural biology facilities  Eropean founds (ESSR) and MIZŠ funds 
40. Tecan Multi-functional spectrophotometer for microtiter plates   2012  68999  PhD Boris Turk   Analytical facilities  Eropean founds (ESSR) and MIZŠ funds 
41. Thermo Scientific Nano-HPLC instrument(EASY-nLC II LC-446)   2010  64284  PhD Boris Turk   Genomic, transcriptomic, proteomics and metabolomics facilities  Eropean founds (ESSR) and MIZŠ funds 
42. The Supercontinuum Triple Laser for the microscope  2011  102000  PhD Robert Zorec   Structural biology facilities  Eropean founds (ESSR) and MIZŠ funds 
43. Ti:Saphire laser  2010  159982  PhD Robert Zorec   Structural biology facilities  Eropean founds (ESSR) and MIZŠ funds 
44. Upgrade of ÄKTAexpress Single System (CO-RO 021/2010)  2010  43182  PhD Dušan Turk   Structural biology facilities  Eropean founds (ESSR) and MIZŠ funds 
45. Upgrade of N-terminal aminoacid sequencer/  2010  111552  PhD Igor Križaj   Genomic, transcriptomic, proteomics and metabolomics facilities  Eropean founds (ESSR) and MIZŠ funds 
46. US for heart ALOKA ProSound ALPHA 7 Premier  2011  161361  PhD Franc Strle   Biomedical imaging facilities  Eropean founds (ESSR) and MIZŠ funds 
Mentors for junior researchers (2)
no. Code Name and surname Research area Status
1. 04988  PhD Dušan Turk  Natural sciences and mathematics  Researcher 
2. 06058  PhD Stojan Stavber  Natural sciences and mathematics  Researcher 
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