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Projects / Programmes source: ARRS

Intelligent Content-Aware Nanospectroscopy (iCAN) of molecular events in nanoparticles-induced neurodegeneration

Research activity

Code Science Field Subfield
1.02.07  Natural sciences and mathematics  Physics  Biophysics 
2.07.07  Engineering sciences and technologies  Computer science and informatics  Intelligent systems - software 

Code Science Field
1.03  Natural Sciences  Physical sciences 
1.02  Natural Sciences  Computer and information sciences 
Keywords
nanoparticles, molecular initiating events, adverse-outcome pathways, neurodegeneration, inflammation, fluorescence, microscopy, spectroscopy, super-resolution optical methods, machine learning, computer vision
Evaluation (rules)
source: COBISS
Points
2,825.63
A''
806
A'
1,423.42
A1/2
1,833.39
CI10
7,526
CImax
879
h10
40
A1
10.24
A3
12.09
Data for the last 5 years (citations for the last 10 years) on March 28, 2023; A3 for period 2017-2021
Data for ARRS tenders ( 04.04.2019 – Programme tender, archive )
Database Linked records Citations Pure citations Average pure citations
WoS  194  6,283  5,766  29.72 
Scopus  210  8,143  7,492  35.68 
Researchers (12)
no. Code Name and surname Research area Role Period No. of publications
1.  29381  PhD Luka Čehovin Zajc  Computer science and informatics  Researcher  2021 - 2023  107 
2.  55529  Petra Čotar    Technician  2021 - 2023 
3.  21546  PhD Tilen Koklič  Physics  Researcher  2020 - 2023  132 
4.  38854  Boštjan Kokot  Physics  Researcher  2020 - 2023  25 
5.  38855  PhD Hana Kokot  Physics  Junior researcher  2020 - 2023  36 
6.  53101  Ana Krišelj    Technician  2020 - 2023  20 
7.  34747  PhD Rok Podlipec  Physics  Researcher  2020 - 2023  73 
8.  52062  Aleksandar Sebastijanović  Physics  Junior researcher  2020 - 2023  12 
9.  18198  PhD Danijel Skočaj  Computer science and informatics  Researcher  2020 - 2023  286 
10.  18273  PhD Janez Štrancar  Physics  Researcher  2020 - 2023  359 
11.  34398  PhD Domen Tabernik  Computer science and informatics  Researcher  2020 - 2023  45 
12.  32057  PhD Iztok Urbančič  Physics  Principal Researcher  2020 - 2023  115 
Organisations (2)
no. Code Research organisation City Registration number No. of publications
1.  0106  Jožef Stefan Institute  Ljubljana  5051606000  85,620 
2.  1539  University of Ljubljana, Faculty of Computer and Information Science  Ljubljana  1627023  14,361 
Abstract
Inhalation of fine particulate matter (PM2.5) and ultrafine nanoparticles in polluted air is knowingly associated with neurodegenerative and other chronic diseases, which are one of the major contributors to the global death burden. Even though increasing amounts of engineered nanoparticles enter the environment, our limited understanding of the mechanisms of their action hinders efficient prevention and treatment of associated health conditions. To understand the causal relationship between exposure to nanoparticles and disease progression, it is crucial to discern Adverse Outcome Pathways (AOPs), which connect initiating events on the molecular level to the adverse outcome at the level of an organism via a complete sequence of causally linked key events. We have recently visualised such early supramolecular rearrangements at the NP-cell contact by advanced live-cell super-resolution microscopy and spectroscopy techniques. However, their slow acquisition process has precluded adequate sampling of such rare events to complete the AOPs. We aim to improve the statistics of the captured rare events by developing the Intelligent Content-Aware Nanospectroscopy (iCAN). We will employ intelligent state-of-the-art computer-vision algorithms to automatically identify the content of interest for targeted nanospectroscopic measurements, which will allow us to identify and quantify early events following NP exposure. By additional evaluation of the response of individual cells to their local dose, we aim to causally connect the early events leading towards neurodegenerative effects of exposure to nanoparticles.
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